Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_00059Y_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000074969-ENSDARG00000062633	CGP	7955	15:7350536-8225907
Gene	Transcript	Position	Biotype
ENSDARG00000062633 (cadm2b) cell adhesion molecule 2b	ENSDART00000090790 (cadm2b-001)	8064815-8225907	protein_coding
ENSDARG00000074969 (GBE1 (2 of 2)) glucan (1,4-alpha-), branching enzyme 1	ENSDART00000113599 (GBE1 (2 of 2)-201)	7350536-7494771	protein_coding
	ENSDART00000150771 (GBE1 (2 of 2)-001)	7350547-7579237	protein_coding
ENSDARG00000097641 (si:dkey-39c10.2) si:dkey-39c10.2	ENSDART00000156896 (si:dkey-39c10.2-001)	7870456-7870597	lincRNA

CIL_00059Y_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000114480-ENSG00000175161	CGP	9606	3:81489699-86074429
Gene	Transcript	Position	Biotype
ENSG00000114480 (GBE1) glucan (1,4-alpha-), branching enzyme 1	ENST00000429644 (GBE1-001)	81489699-81762161	protein_coding
	ENST00000477426 (GBE1-004)	81654579-81670982	processed_transcript
	ENST00000484687 (GBE1-006)	81534667-81577943	retained_intron
	ENST00000486920 (GBE1-005)	81648967-81650346	retained_intron
	ENST00000489715 (GBE1-002)	81489933-81743629	protein_coding
	ENST00000498468 (GBE1-008)	81642571-81649878	retained_intron
ENSG00000175161 (CADM2) cell adhesion molecule 2	ENST00000383699 (CADM2-002)	84958981-86074429	protein_coding
	ENST00000405615 (CADM2-001)	85726482-86066783	protein_coding
	ENST00000407528 (CADM2-006)	84959546-86066835	protein_coding
	ENST00000473523 (CADM2-005)	84958989-84959636	processed_transcript
	ENST00000485126 (CADM2-004)	84959005-84960438	processed_transcript
ENSG00000222389 (RNU2-28P) RNA, U2 small nuclear 28, pseudogene	ENST00000410457 (RNU2-28P-201)	81509476-81509664	snRNA
ENSG00000239440 (RP11-260O18.1)	ENST00000470263 (RP11-260O18.1-001)	81986138-82463675	lincRNA
ENSG00000239440 (RP11-260O18.1)	ENST00000494340 (RP11-260O18.1-002)	81986152-82202454	lincRNA
ENSG00000239519 (CADM2-AS1) CADM2 antisense RNA 1	ENST00000476021 (CADM2-AS1-001)	85992183-86028007	antisense
ENSG00000240404 (RP11-142L1.3)	ENST00000477387 (RP11-142L1.3-001)	81612790-81613072	processed_pseudogene
ENSG00000241095 (CYP51A1P1) cytochrome P450, family 51, subfamily A, polypeptide 1 pseudogene 1	ENST00000492267 (CYP51A1P1-001)	82806515-82808021	processed_pseudogene
ENSG00000241319 (SETP6) SET pseudogene 6	ENST00000479329 (SETP6-001)	81612238-81612805	processed_pseudogene
ENSG00000241367 (RPL7AP23) ribosomal protein L7a pseudogene 23	ENST00000482625 (RPL7AP23-001)	82319172-82320279	processed_pseudogene
ENSG00000241648 (CADM2-AS2) CADM2 antisense RNA 2	ENST00000467225 (CADM2-AS2-001)	85799987-85828050	antisense
ENSG00000242009 (RP11-359D24.1)	ENST00000471614 (RP11-359D24.1-001)	81840547-81922861	lincRNA
ENSG00000242190 (RP11-142L1.1)	ENST00000497946 (RP11-142L1.1-001)	81762706-81764756	lincRNA
ENSG00000242195 (SRRM1P2) serine/arginine repetitive matrix 1 pseudogene 2	ENST00000464531 (SRRM1P2-001)	83937045-83938236	processed_pseudogene
ENSG00000242339 (RP11-735B13.2)	ENST00000488348 (RP11-735B13.2-001)	84884936-84893379	lincRNA
ENSG00000243915 (PRKRIRP2) protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 2	ENST00000489193 (PRKRIRP2-001)	86012561-86015120	processed_pseudogene
ENSG00000266652 (AC107025.1)	ENST00000578770 (AC107025.1-201)	84496576-84496663	miRNA

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000062633

ENSDART00000090790

N/A

6.969±0.00

N/A

0.175±0.00

N/A

1.430±0.00

N/A

ENSDARG00000074969

ENSDART00000113599

N/A

1.639±1.57

N/A

4.551±0.84

4.693±0.00

2.445±0.00

N/A

2.579±0.00

N/A

ENSDART00000150771

N/A

2.059±0.03

N/A

2.528±0.12

4.920±0.00

1.921±0.00

N/A

2.280±0.00

N/A

ENSDARG00000097641

ENSDART00000156896

N/A

35.348±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000114480

ENST00000429644

15.736±0.00

2.823±0.00

2.460±0.00

1.475±0.80

19.163±0.00

5.582±3.56

5.105±1.66

8.379±1.86

5.165±1.59

6.211±2.02

10.232±4.34

4.999±3.28

5.009±1.75

4.234±2.21

N/A

N/A

N/A

31.954±0.00

4.363±0.00

1.175±0.00

1.649±0.00

15.546±9.29

6.288±3.38

6.028±0.58

8.730±1.78

5.288±0.07

6.755±0.00

9.991±7.61

2.256±0.72

3.134±1.00

1.680±1.22

ENST00000498468

N/A

ENSG00000175161

ENST00000383699

N/A

11.782±6.30

0.141±0.00

N/A

0.063±0.00

0.074±0.04

0.019±0.00

0.007±0.00

N/A

ENST00000405615

N/A

24.573±0.00

1.672±0.00

N/A

1.109±0.00

0.649±0.00

1.245±0.00

0.210±0.13

0.048±0.01

0.097±0.00

ENST00000407528

N/A

0.785±0.00

0.321±0.00

0.478±0.00

N/A

ENST00000473523

N/A

0.894±0.00

N/A

ENST00000485126

N/A

1.302±0.00

N/A

1.221±0.00

ENSG00000222389

ENST00000410457

0.175±0.00

N/A

1.823±0.00

N/A

0.095±0.00

N/A

0.049±0.00

0.126±0.00

N/A

ENSG00000239440

ENST00000470263

N/A

0.012±0.00

N/A

0.084±0.00

N/A

0.006±0.00

0.005±0.00

N/A

0.095±0.09

ENST00000494340

N/A

0.051±0.00

N/A

0.167±0.15

ENSG00000239519

ENST00000476021

0.073±0.00

0.032±0.00

N/A

0.181±0.00

0.050±0.00

0.037±0.01

0.003±0.00

N/A

0.046±0.00

0.018±0.00

N/A

0.007±0.00

N/A

0.012±0.00

ENSG00000240404

ENST00000477387

N/A

0.039±0.00

N/A

0.039±0.00

0.147±0.12

N/A

ENSG00000241095

ENST00000492267

0.047±0.00

N/A

0.037±0.03

N/A

0.019±0.00

ENSG00000241319

ENST00000479329

0.038±0.00

0.019±0.00

N/A

0.082±0.04

0.018±0.00

0.017±0.00

0.242±0.12

0.467±0.00

0.499±0.00

0.218±0.00

2.113±0.00

0.369±0.00

0.032±0.00

N/A

ENSG00000241367

ENST00000482625

N/A

0.023±0.00

N/A

ENSG00000241648

ENST00000467225

0.054±0.00

0.075±0.00

N/A

0.058±0.00

N/A

0.104±0.00

N/A

0.023±0.00

N/A

0.071±0.01

ENSG00000242009

ENST00000471614

N/A

0.377±0.21

ENSG00000242190

ENST00000497946

N/A

0.103±0.00

N/A

0.095±0.00

ENSG00000242195

ENST00000464531

N/A

0.013±0.00

ENSG00000242339

ENST00000488348

0.141±0.00

0.034±0.00

N/A

0.071±0.00

0.033±0.00

N/A

0.160±0.00

N/A

0.121±0.00

N/A

0.111±0.00

ENSG00000243915

ENST00000489193

0.005±0.00

N/A

0.187±0.12

N/A

0.037±0.03

N/A

0.123±0.12

N/A

0.008±0.00

ENSG00000266652

ENST00000578770

N/A

0.499±0.00

N/A

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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