C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTGES3L-AARSD1 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409399 PTGES3L-AARSD1-002 ENSG00000108825 9606 - 17:42950530-42980490 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000447 CIL_000447_0001 CGP 17:42900797-42980528
CIL_00063V CIL_00063V_0001 CGP 17:42950526-42980528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004813 IEA alanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006419 IEA alanyl-tRNA aminoacylation
GO:0008150 ND biological_process
GO:0016876 IEA ligase activity, forming aminoacyl-tRNA and related compounds
GO:0043039 IEA tRNA aminoacylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107259 Gm27029-001 protein_coding Mus_musculus 0 1975
ENSMUST00000107257 Gm27029-002 protein_coding Mus_musculus 0 1910
ENSMUST00000070395 Aarsd1-003 protein_coding Mus_musculus 0 1421
ENSMUST00000133240 Aarsd1-009 processed_transcript Mus_musculus 0 566
ENSMUST00000107252 Ptges3l-002 protein_coding Mus_musculus 0 508
ENSMUST00000103102 Ptges3l-001 protein_coding Mus_musculus 0 496
ENSMUST00000093933 Ptges3l-003 protein_coding Mus_musculus 0 444
ENSMUST00000150957 Ptges3l-005 retained_intron Mus_musculus 0 399
ENSMUST00000140123 Aarsd1-011 retained_intron Mus_musculus 0 390
ENSMUST00000189049 Aarsd1-012 retained_intron Mus_musculus 8.00001e-42 176

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