C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alanyl-tRNA synthetase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070395 Aarsd1-003 ENSMUSG00000075528 10090 - 11:101406839-101417615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070395 12.948±1.92 10.960±1.15 16.218±0.86 33.491±19.16 9.988±1.15 7.941±1.01 11.443±0.89 13.976±1.09 14.960±8.83 10.060±0.94 18.261±1.28 18.385±11.10 22.318±19.94 15.020±9.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000447 CIL_000447_0002 CGP 11:101367561-101424796
CIL_00063V CIL_00063V_0002 CGP 11:101406664-101424796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002161 IDA aminoacyl-tRNA editing activity
GO:0002196 IDA Ser-tRNA(Ala) hydrolase activity
GO:0003676 IEA nucleic acid binding
GO:0004813 IEA alanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006419 IEA alanyl-tRNA aminoacylation
GO:0006450 IDA regulation of translational fidelity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360221 PTGES3L-AARSD1-004 protein_coding Homo_sapiens 0 1421
ENST00000409103 PTGES3L-AARSD1-005 protein_coding Homo_sapiens 0 1421
ENST00000409399 PTGES3L-AARSD1-002 protein_coding Homo_sapiens 0 1421
ENST00000413508 RP13-33H18.1-001 processed_pseudogene Homo_sapiens 0 950
ENST00000416949 AARSD1-015 processed_transcript Homo_sapiens 0 390
ENST00000421990 PTGES3L-AARSD1-001 protein_coding Homo_sapiens 0 1421
ENST00000423601 PTGES3L-AARSD1-006 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000427569 AARSD1-001 protein_coding Homo_sapiens 0 1452
ENST00000430739 AARSD1-013 protein_coding Homo_sapiens 0 824
ENST00000436545 AARSD1-017 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000441280 AARSD1-002 retained_intron Homo_sapiens 0 758
ENST00000450475 AARSD1-014 nonsense_mediated_decay Homo_sapiens 0 872
ENST00000452752 PTGES3L-AARSD1-007 protein_coding Homo_sapiens 0 261
ENST00000474578 AARSD1-021 retained_intron Homo_sapiens 0 538
ENST00000478040 AARSD1-022 retained_intron Homo_sapiens 0 315
ENST00000486664 AARSD1-023 retained_intron Homo_sapiens 0 446
ENST00000491665 AARSD1-019 retained_intron Homo_sapiens 0 444
ENST00000492036 AARSD1-012 retained_intron Homo_sapiens 0 335
ENST00000587023 AARSD1-033 retained_intron Homo_sapiens 0 292
ENST00000591096 AARSD1-030 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000591910 AARSD1-028 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000592136 AARSD1-029 retained_intron Homo_sapiens 0 292
ENST00000593123 AARSD1-032 retained_intron Homo_sapiens 0 361

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