C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (neutral amino acid transporter), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412532 SLC1A5-005 ENSG00000105281 9606 - 19:46774924-46787342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412532
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412532 24.358±0.00 3.709±0.00 26.561±15.33 14.031±5.06 5.177±3.99 24.690±0.00 12.968±0.00 28.821±22.72 1.280±0.00 61.284±48.55 98.514±23.49 69.732±16.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044E CIL_00044E_0003 CGP 19:46719507-46776988
CIL_00044D CIL_00044D_0003 CGP 19:46746046-46788594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0004872 TAS receptor activity
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0006865 TAS amino acid transport
GO:0006868 TAS glutamine transport
GO:0009615 IEA response to virus
GO:0015175 TAS neutral amino acid transmembrane transporter activity
GO:0015186 TAS L-glutamine transmembrane transporter activity
GO:0015804 TAS neutral amino acid transport
GO:0016020 IEA:IDA membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108496 Slc1a5-001 protein_coding Mus_musculus 0 859
ENSMUST00000127401 Slc1a5-002 retained_intron Mus_musculus 0 632
ENSMUST00000134407 Slc1a5-006 processed_transcript Mus_musculus 0 556
ENSMUST00000141349 Slc1a5-007 retained_intron Mus_musculus 0 424

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