C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: split hand/foot malformation (ectrodactyly) type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417009 SHFM1-008 ENSG00000127922 9606 - 7:96622562-96709861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417009 89.863±0.00 81.359±0.00 19.066±0.00 32.444±12.57 53.659±40.13 49.581±33.57 28.932±13.64 41.160±0.22 45.023±27.06 54.008±0.00 23.823±9.02 230.760±189.75 115.272±74.10 157.921±35.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W8 CIL_0007W8_0001 VISTA 7:95945535-96548789
CIL_00097Z CIL_00097Z_0001 VISTA 7:96146093-96746679
CIL_000980 CIL_000980_0001 VISTA 7:96195606-96796103
CIL_000981 CIL_000981_0001 VISTA 7:96291763-96892262

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041111 Shfm1-001 protein_coding Mus_musculus 0 231

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