C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417201 RBM18-001 ENSG00000119446 9606 - 9:122237624-122264839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417201
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417201 2.610±0.00 1.366±0.00 6.466±0.00 1.508±0.00 0.913±0.00 2.009±0.59 1.800±0.00 3.129±1.29 2.590±0.00 2.868±1.20 2.862±0.99 3.875±0.37 2.410±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N8 CIL_0006N8_0001 CGP 9:122202577-122264839
CIL_0006N9 CIL_0006N9_0001 CGP 9:122237624-122323464

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028251 Rbm18-001 protein_coding Mus_musculus 0 1496
ENSMUST00000122456 Rbm18-004 protein_coding Mus_musculus 0 636
ENSMUST00000134668 Rbm18-003 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000142809 Rbm18-002 retained_intron Mus_musculus 0 401

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