C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006N9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119446-ENSG00000148187 CGP 9606 9:122237624-122323464
GeneTranscriptPositionBiotype
ENSG00000119446 (RBM18)
RNA binding motif protein 18 		ENST00000417201 (RBM18-001) 122237624-122264839 protein_coding
ENST00000483428 (RBM18-002) 122241758-122264794 processed_transcript
ENST00000491850 (RBM18-003) 122241670-122247546 processed_transcript
ENSG00000148187 (MRRF)
mitochondrial ribosome recycling factor 		ENST00000297908 (MRRF-201) 122264603-122323461 protein_coding
ENST00000344641 (MRRF-001) 122264656-122323464 protein_coding
ENST00000373723 (MRRF-010) 122264895-122323092 protein_coding
ENST00000373724 (MRRF-006) 122265462-122285946 processed_transcript
ENST00000373727 (MRRF-005) 122264914-122285394 retained_intron
ENST00000373728 (MRRF-003) 122264914-122291798 retained_intron
ENST00000373729 (MRRF-004) 122264904-122322724 protein_coding
ENST00000394315 (MRRF-202) 122270864-122323461 protein_coding
ENST00000441707 (MRRF-007) 122264887-122285287 protein_coding
ENST00000467864 (MRRF-009) 122270808-122313330 nonsense_mediated_decay
ENST00000470366 (MRRF-008) 122264926-122322678 nonsense_mediated_decay
ENST00000489572 (MRRF-002) 122270848-122323088 nonsense_mediated_decay
CIL_0006N9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026889-ENSMUSG00000026887 CGP 10090 2:36116079-36190647
GeneTranscriptPositionBiotype
ENSMUSG00000026887 (Mrrf)
mitochondrial ribosome recycling factor 		ENSMUST00000028250 (Mrrf-001) 36136389-36190647 protein_coding
ENSMUST00000132042 (Mrrf-002) 36136634-36147919 nonsense_mediated_decay
ENSMUST00000162490 (Mrrf-003) 36147103-36159665 processed_transcript
ENSMUSG00000026889 (Rbm18)
RNA binding motif protein 18 		ENSMUST00000028251 (Rbm18-001) 36116079-36136773 protein_coding
ENSMUST00000122456 (Rbm18-004) 36117626-36136611 protein_coding
ENSMUST00000134668 (Rbm18-003) 36117768-36136615 nonsense_mediated_decay
ENSMUST00000142809 (Rbm18-002) 36126220-36136611 retained_intron
ENSMUSG00000081496 (Gm13428)
predicted gene 13428 		ENSMUST00000117540 (Gm13428-001) 36137339-36137703 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006N9_0001ENSG00000119446ENST00000417201ENST00000483428ENST00000491850ENSG00000148187ENST00000297908ENST00000344641ENST00000373723ENST00000373724ENST00000373727ENST00000373728ENST00000373729ENST00000394315ENST00000441707ENST00000467864ENST00000470366ENST00000489572CIL_0006N9_0002ENSMUSG00000026887ENSMUST00000028250ENSMUST00000132042ENSMUST00000162490ENSMUSG00000026889ENSMUST00000028251ENSMUST00000122456ENSMUST00000134668ENSMUST00000142809ENSMUSG00000081496ENSMUST00000117540
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006N9_0001ENSG00000119446ENST00000417201ENST00000483428ENSG00000148187ENST00000297908ENST00000344641ENST00000373728ENST00000373729ENST00000394315ENST00000467864ENST00000470366CIL_0006N9_0002ENSMUSG00000026887ENSMUST00000028250ENSMUSG00000026889ENSMUST00000028251ENSMUSG00000081496ENSMUST00000117540
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119446 ENST00000417201 2.610±0.00 N/A 1.366±0.00 6.466±0.00 1.508±0.00 0.913±0.00 2.009±0.59 1.800±0.00 3.129±1.29 2.590±0.00 2.868±1.20 2.862±0.99 3.875±0.37 2.410±0.00
ENST00000483428 N/A N/A 3.310±0.00 N/A N/A N/A N/A N/A N/A N/A 4.768±0.00 N/A N/A N/A
ENST00000491850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148187 ENST00000297908 N/A N/A N/A N/A 4.700±0.00 6.525±0.00 N/A N/A 6.085±0.00 5.943±0.00 N/A 13.962±0.00 4.396±0.00 8.695±0.00
ENST00000344641 6.711±0.00 4.480±0.00 N/A N/A N/A N/A 3.205±1.61 10.280±0.00 N/A N/A 7.523±0.00 5.654±1.39 2.557±0.00 N/A
ENST00000373723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373728 N/A N/A N/A N/A 2.145±0.00 2.988±0.00 N/A N/A 4.862±0.00 N/A N/A 5.339±0.00 N/A N/A
ENST00000373729 N/A N/A N/A N/A N/A 5.241±0.00 N/A 2.540±0.00 N/A N/A N/A 17.103±0.00 11.640±0.00 21.695±0.00
ENST00000394315 N/A N/A 2.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467864 N/A N/A N/A N/A 4.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.375±0.00
ENST00000489572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026887 ENSMUST00000028250 11.238±1.15 16.757±1.84 7.496±0.12 5.968±2.19 10.054±4.13 5.227±0.73 11.062±1.28 11.324±1.35 7.406±2.34 11.690±1.40 4.706±0.23 11.648±4.53 7.095±1.79 15.998±8.47
ENSMUST00000132042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026889 ENSMUST00000028251 8.567±2.61 3.597±0.06 14.316±1.37 20.864±6.32 6.555±3.22 3.873±0.36 7.598±2.69 7.177±0.60 5.269±2.43 7.524±2.19 10.315±0.45 8.849±1.86 13.954±0.90 4.264±1.35
ENSMUST00000122456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081496 ENSMUST00000117540 0.385±0.19 N/A 0.037±0.00 0.040±0.00 0.219±0.00 N/A 0.340±0.00 0.189±0.00 0.049±0.00 N/A N/A 0.654±0.44 0.074±0.02 2.091±0.69

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