C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424975 LSM2-001 ENSG00000231502 9606 - CHR_HSCHR6_MHC_DBB_CTG1:31779577-31789166 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017070 NAS U6 snRNA binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114011 Lsm2-001 protein_coding Mus_musculus 0 499
ENSMUST00000007266 Lsm2-003 protein_coding Mus_musculus 0 446
ENSMUST00000174326 Lsm2-008 processed_transcript Mus_musculus 0 436
ENSMUST00000172777 Lsm2-004 processed_transcript Mus_musculus 0 435
ENSMUST00000172890 Lsm2-007 processed_transcript Mus_musculus 0 416
ENSMUST00000173004 Lsm2-011 protein_coding Mus_musculus 0 351
ENSMUST00000172666 Lsm2-010 retained_intron Mus_musculus 0 350
ENSMUST00000174860 Lsm2-005 retained_intron Mus_musculus 0 344
ENSMUST00000174241 Lsm2-009 processed_transcript Mus_musculus 0 339
ENSMUST00000174434 Lsm2-006 retained_intron Mus_musculus 0 248

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