C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007266 Lsm2-003 ENSMUSG00000007050 10090 + 17:34982129-34985891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000007266
Transcript ID Brain Testis
ENSMUST00000007266 0.592±0.00 77.848±30.62

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006397 IEA mRNA processing
GO:0019901 IDA protein kinase binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375661 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000383391 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000424975 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000432122 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000434125 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000455705 LSM2-001 protein_coding Homo_sapiens 0 446
ENST00000461885 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000462178 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000462194 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000464983 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000467102 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000467300 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000467450 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000470083 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000470086 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000474334 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000474526 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000477511 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000480165 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000482154 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000482379 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000482931 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000483453 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000484450 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000486802 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000488547 LSM2-002 processed_transcript Homo_sapiens 0 348
ENST00000491421 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000491537 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000493146 LSM2-006 processed_transcript Homo_sapiens 0 446
ENST00000493387 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000509173 RP11-47F1.1-001 processed_pseudogene Homo_sapiens 0 327

Loading