C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114011 Lsm2-001 ENSMUSG00000007050 10090 + 17:34981880-34985891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000114011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000114011 23.465±6.98 20.596±3.63 18.859±3.34 22.627±15.31 25.738±0.97 18.346±3.84 11.681±1.66 20.101±1.29 39.996±25.00 17.790±2.99 5.302±1.09 39.827±11.04 26.624±15.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019901 IDA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375661 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000383391 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000424975 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000432122 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000434125 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000455705 LSM2-001 protein_coding Homo_sapiens 0 499
ENST00000461885 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000462178 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000462194 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000464983 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000467102 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000467300 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000467450 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000470083 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000470086 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000474334 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000474526 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000477511 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000480165 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000482154 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000482379 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000482931 LSM2-004 processed_transcript Homo_sapiens 0 348
ENST00000483453 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000484450 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000486802 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000488547 LSM2-002 processed_transcript Homo_sapiens 0 348
ENST00000491421 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000491537 LSM2-003 processed_transcript Homo_sapiens 0 303
ENST00000493146 LSM2-006 processed_transcript Homo_sapiens 0 448
ENST00000493387 LSM2-005 processed_transcript Homo_sapiens 0 418
ENST00000509173 RP11-47F1.1-001 processed_pseudogene Homo_sapiens 0 327

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