C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427568 AC079248.1-001 ENSG00000234119 9606 - 2:145826285-145827830 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungTestisENST00000427568
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Testis
ENST00000427568 0.045±0.00 0.007±0.00 0.013±0.00 0.007±0.00 0.025±0.00 0.040±0.00 0.006±0.00 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GY CIL_0007GY_0001 CGP 2:144388001-147930826
CIL_0007L9 CIL_0007L9_0004 UCNEbase 2:145198080-146951268
CIL_000839 CIL_000839_0001 VISTA 2:145354772-145956051
CIL_0008AJ CIL_0008AJ_0001 VISTA 2:145631482-146232531
CIL_0007T5 CIL_0007T5_0001 VISTA 2:145634720-146235715
CIL_0008AE CIL_0008AE_0001 VISTA 2:145640170-146241077
CIL_00082G CIL_00082G_0001 VISTA 2:145740060-146342075

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180840 Metap2-002 protein_coding Mus_musculus 0 880
ENSMUST00000047910 Metap2-001 protein_coding Mus_musculus 0 880
ENSMUST00000181217 Metap2-006 protein_coding Mus_musculus 0 848
ENSMUST00000181091 Metap2-007 protein_coding Mus_musculus 0 780
ENSMUST00000181894 Metap2-015 retained_intron Mus_musculus 0 375
ENSMUST00000169190 Bend4-201 protein_coding Mus_musculus 0.0001 55

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