C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BEN domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169190 Bend4-201 ENSMUSG00000092060 10090 - 5:67392147-67427799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169190 0.422±0.15 0.118±0.07 0.461±0.10 1.252±0.97 0.617±0.01 0.183±0.03 0.388±0.05 0.146±0.03 0.123±0.07 0.355±0.24 0.048±0.02 1.570±0.91 5.211±2.42 1.796±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z2 CIL_0002Z2_0002 CGP 5:67306955-67427799
CIL_0002Z3 CIL_0002Z3_0002 CGP 5:67392147-67623552

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114029 BEND4-201 protein_coding Danio_rerio 0 322
ENST00000389005 C17orf85-001 protein_coding Homo_sapiens 0.0001 55
ENST00000427568 AC079248.1-001 processed_pseudogene Homo_sapiens 0.0001 55
ENST00000502486 BEND4-001 protein_coding Homo_sapiens 0 1864
ENST00000504360 BEND4-002 protein_coding Homo_sapiens 0 1415
ENST00000563485 RP11-844G16.1-001 processed_pseudogene Homo_sapiens 0.0005 53
ENST00000574379 C17orf85-005 retained_intron Homo_sapiens 0.0001 55
ENST00000574911 C17orf85-004 nonsense_mediated_decay Homo_sapiens 0.0001 55
ENST00000575815 C17orf85-002 retained_intron Homo_sapiens 0.0001 55
ENST00000611697 BEND4-201 protein_coding Homo_sapiens 0 1400

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