C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a pseudogene 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434149 RPL23AP50-001 ENSG00000232778 9606 + 6:107931800-107932254 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverOvaryTestisENST00000434149
Transcript ID Bladder Breast Heart Kidney Liver Ovary Testis
ENST00000434149 0.135±0.00 0.234±0.10 0.140±0.00 0.095±0.00 0.360±0.00 0.178±0.01 0.175±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000190969 RP23-349I9.25-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 3e-20 102
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 1e-19 100

Loading