C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin XB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451343 TNXB-006 ENSG00000168477 9606 - 6:32041155-32046128 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000424 CIL_000424_0001 CGP 6:32014762-32041670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 ISS integrin binding
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0005576 IEA extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005583 IDA fibrillar collagen trimer
GO:0005615 IDA extracellular space
GO:0005622 IDA intracellular
GO:0006629 IEA lipid metabolic process
GO:0006631 IEA fatty acid metabolic process
GO:0006641 IEA triglyceride metabolic process
GO:0007155 ISS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0008201 ISS heparin binding
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030036 ISS actin cytoskeleton organization
GO:0030198 IEA extracellular matrix organization
GO:0030199 IEA collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0032963 IMP collagen metabolic process
GO:0043206 IEA extracellular fibril organization
GO:0043506 IEA regulation of JUN kinase activity
GO:0048251 IMP elastic fiber assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087399 Tnxb-001 protein_coding Mus_musculus 0 2001
ENSMUST00000168533 Tnxb-002 protein_coding Mus_musculus 0 1877
ENSMUST00000173277 Tnxa-001 unprocessed_pseudogene Mus_musculus 0 1022
ENSMUST00000025223 Cyp21a1-001 protein_coding Mus_musculus 2e-34 152

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