C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 550
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457177 ZNF550-001 ENSG00000251369 9606 - 19:57541836-57559863 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000457177
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000457177 1.038±0.00 1.026±0.00 1.353±0.52 0.877±0.00 0.713±0.00 0.411±0.00 0.324±0.00 0.885±0.17 1.681±0.15 0.665±0.15 2.102±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121178 Gm14229-001 processed_pseudogene Mus_musculus 4e-27 128
ENSMUST00000186475 protein_coding Mus_musculus 8e-19 100
ENSMUST00000187028 nonsense_mediated_decay Mus_musculus 8e-19 100
ENSMUST00000060444 Zfp3-001 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000078257 D130040H23Rik-201 protein_coding Mus_musculus 0.00000003 66
ENSMUST00000054780 Zfp959-001 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000099439 Gm4767-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000188096 Gm4767-001 protein_coding Mus_musculus 0.00002 57
ENSMUST00000105315 Gm10778-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000189672 Gm10778-001 protein_coding Mus_musculus 0.00002 57

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