C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470363 HLA-C-010 ENSG00000204525 9606 - 6:31268749-31270422 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0001 CGP 6:31268749-31357188

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 261
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 257
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 257
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 257
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 254
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 250
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 250
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 248
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 248
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 248
ENSMUST00000046131 Gm7030-201 protein_coding Mus_musculus 0 246
ENSMUST00000173322 Gm7030-001 protein_coding Mus_musculus 0 246
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 244
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 0 241
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 0 241
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 0 241
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 239
ENSMUST00000172968 Gm7030-202 protein_coding Mus_musculus 0 239
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 0 224
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 0 224
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 0 224
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 0 224
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 224
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 224
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 224
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 224
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 224
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 0 222
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 0 219
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 0 213
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 0 213
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000073546 H2-M10.3-001 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 3.9937e-43 180
ENSMUST00000174378 Gm4256-001 unprocessed_pseudogene Mus_musculus 1.99993e-41 174
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 1.99993e-41 174
ENSMUST00000169950 H2-M10.4-201 protein_coding Mus_musculus 8e-40 169
ENSMUST00000057502 H2-M10.4-001 protein_coding Mus_musculus 8e-40 169
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 8e-40 169
ENSMUST00000041964 H2-M11-001 protein_coding Mus_musculus 2e-26 124

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