C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473027 SETP11-001 ENSG00000239570 9606 + 3:151269440-151270129 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000473027
Transcript ID Adipose Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000473027 0.043±0.00 0.359±0.30 0.114±0.00 0.014±0.00 0.480±0.00 0.380±0.00 0.021±0.00 2.094±0.00 0.183±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0001 CGP 3:150926163-151437072
CIL_0002IE CIL_0002IE_0001 CGP 3:151085697-151437072
CIL_0002IF CIL_0002IF_0001 CGP 3:151197832-151278467
CIL_0002IG CIL_0002IG_0001 CGP 3:151212117-151316952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067996 Set-002 protein_coding Mus_musculus 0 667
ENSMUST00000125824 Set-005 processed_transcript Mus_musculus 0 667
ENSMUST00000102866 Set-001 protein_coding Mus_musculus 0 667
ENSMUST00000183511 Gm9531-001 transcribed_processed_pseudogene Mus_musculus 0 628
ENSMUST00000134364 Set-004 protein_coding Mus_musculus 0 560
ENSMUST00000121098 Gm12642-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000120258 Gm16420-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000147590 Set-007 processed_transcript Mus_musculus 0 250

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