C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET nuclear oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067996 Set-002 ENSMUSG00000054766 10090 + 2:30066456-30072577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067996 23.118±13.10 17.712±4.39 34.651±1.44 54.742±24.91 22.022±16.12 30.532±5.93 13.830±0.46 22.962±2.52 36.112±24.50 32.641±5.20 18.780±0.71 66.203±30.48 35.234±19.96 13.596±4.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LV CIL_0002LV_0003 CGP 2:30031546-30072577
CIL_0007EE CIL_0007EE_0002 CGP 2:30057378-30091022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0006334 IEA nucleosome assembly
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322030 SET-002 protein_coding Homo_sapiens 0 2342
ENST00000372686 SET-010 protein_coding Homo_sapiens 0 1210
ENST00000372688 SET-201 protein_coding Homo_sapiens 0 1146
ENST00000372692 SET-001 protein_coding Homo_sapiens 0 1971
ENST00000409104 SET-003 protein_coding Homo_sapiens 0 1182
ENST00000412243 SETP22-001 processed_pseudogene Homo_sapiens 0 983
ENST00000412724 SETP15-001 processed_pseudogene Homo_sapiens 0 265
ENST00000423837 SETP9-001 transcribed_processed_pseudogene Homo_sapiens 0 870
ENST00000424368 SETP10-001 processed_pseudogene Homo_sapiens 0 660
ENST00000435341 SETP8-001 processed_pseudogene Homo_sapiens 0 736
ENST00000455717 SETP4-001 processed_pseudogene Homo_sapiens 0 970
ENST00000457046 SETP20-001 processed_pseudogene Homo_sapiens 0 898
ENST00000466009 SET-005 processed_transcript Homo_sapiens 0 202
ENST00000473027 SETP11-001 processed_pseudogene Homo_sapiens 0 667
ENST00000477806 SET-008 processed_transcript Homo_sapiens 0 1053
ENST00000479329 SETP6-001 processed_pseudogene Homo_sapiens 0 580
ENST00000480217 SET-004 processed_transcript Homo_sapiens 0 606
ENST00000480536 SET-012 retained_intron Homo_sapiens 0 503
ENST00000485056 SET-011 retained_intron Homo_sapiens 0 289
ENST00000485873 SETSIP-001 protein_coding Homo_sapiens 0 1053
ENST00000497538 SETP14-001 processed_pseudogene Homo_sapiens 0 1136
ENST00000514799 SETP21-001 processed_pseudogene Homo_sapiens 0 795
ENST00000534163 SETP17-001 processed_pseudogene Homo_sapiens 0 684
ENST00000552169 SETP7-001 processed_pseudogene Homo_sapiens 0 555
ENST00000553886 SETP2-001 processed_pseudogene Homo_sapiens 0 846
ENST00000556014 SETP1-001 processed_pseudogene Homo_sapiens 0 787
ENST00000581726 SETP3-001 processed_pseudogene Homo_sapiens 0 1037
ENST00000596516 SETSIP-201 protein_coding Homo_sapiens 0 1053

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