C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479840 RP5-837J1.1-001 ENSG00000243423 9606 + 17:35076737-35077007 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyLiverLungMusclePlacentaTestisENST00000479840
Transcript ID Adrenal Bladder Brain Breast Kidney Liver Lung Muscle Placenta Testis
ENST00000479840 0.060±0.00 1.385±0.00 0.060±0.00 0.555±0.44 0.359±0.00 6.434±0.00 1.526±1.41 0.053±0.00 0.100±0.00 0.233±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055O CIL_00055O_0001 CGP 17:34980494-35089319

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170206 Gm4468-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000124641 Rpl37rt-001 transcribed_processed_pseudogene Mus_musculus 0 250
ENSMUST00000100847 Rpl37rt-002 processed_transcript Mus_musculus 0 250
ENSMUST00000118727 Gm12351-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000045356 Rpl37-201 protein_coding Mus_musculus 0 244
ENSMUST00000122147 Gm12967-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000121220 Gm13862-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000188131 RP23-250E15.3-001 processed_pseudogene Mus_musculus 9e-28 126

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