C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | MSH5-SAPCD1 readthrough (NMD candidate) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000482009  |
MSH5-SAPCD1-002 |
ENSG00000266442 |
9606 | + |
CHR_HSCHR6_MHC_MCF_CTG1:31835741-31841147  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005524 | IEA | ATP binding |
| GO:0006298 | IEA | mismatch repair |
| GO:0030983 | IEA | mismatched DNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000174603
|
Msh5-007 | nonsense_mediated_decay | Mus_musculus | 0 | 911 |
|
ENSMUST00000097338
|
Msh5-008 | protein_coding | Mus_musculus | 0 | 911 |
|
ENSMUST00000007250
|
Msh5-001 | protein_coding | Mus_musculus | 0 | 911 |
|
ENSMUST00000174026
|
Msh5-003 | nonsense_mediated_decay | Mus_musculus | 0 | 885 |
|
ENSMUST00000172536
|
Msh5-005 | nonsense_mediated_decay | Mus_musculus | 0 | 457 |
