C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 5 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007250 Msh5-001 ENSMUSG00000007035 10090 - 17:35028605-35046622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000007250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000007250 0.157±0.02 0.084±0.02 0.303±0.00 0.508±0.34 0.502±0.18 0.634±0.12 0.335±0.14 1.798±1.51 0.940±0.03 0.320±0.13 1.486±0.52 3.036±0.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007127 IMP meiosis I
GO:0007129 IMP synapsis
GO:0007131 IBA reciprocal meiotic recombination
GO:0007292 IMP female gamete generation
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375703 MSH5-004 protein_coding Homo_sapiens 0 2841
ENST00000375740 MSH5-005 protein_coding Homo_sapiens 0 2034
ENST00000375750 MSH5-002 protein_coding Homo_sapiens 0 2854
ENST00000375755 MSH5-001 protein_coding Homo_sapiens 0 2854
ENST00000395853 MSH5-006 protein_coding Homo_sapiens 0 1718
ENST00000412070 MSH5-001 protein_coding Homo_sapiens 0 918
ENST00000412201 MSH5-011 protein_coding Homo_sapiens 0 1125
ENST00000412975 MSH5-006 protein_coding Homo_sapiens 0 1402
ENST00000414412 MSH5-006 protein_coding Homo_sapiens 0 1718
ENST00000414514 MSH5-004 protein_coding Homo_sapiens 0 1712
ENST00000414810 MSH5-001 protein_coding Homo_sapiens 0 1712
ENST00000416549 MSH5-002 protein_coding Homo_sapiens 0 2854
ENST00000416819 MSH5-004 protein_coding Homo_sapiens 0 2523
ENST00000416964 MSH5-011 protein_coding Homo_sapiens 0 213
ENST00000419269 MSH5-004 protein_coding Homo_sapiens 0 2841
ENST00000420729 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000420731 MSH5-004 protein_coding Homo_sapiens 0 918
ENST00000422428 MSH5-008 protein_coding Homo_sapiens 0 472
ENST00000422658 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000423982 MSH5-021 nonsense_mediated_decay Homo_sapiens 0 2084
ENST00000424681 MSH5-009 protein_coding Homo_sapiens 0 213
ENST00000425344 MSH5-011 protein_coding Homo_sapiens 0 1125
ENST00000425703 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000426512 MSH5-002 protein_coding Homo_sapiens 0 1700
ENST00000427298 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000427735 MSH5-002 protein_coding Homo_sapiens 0 2854
ENST00000427968 MSH5-002 protein_coding Homo_sapiens 0 2538
ENST00000430216 MSH5-006 protein_coding Homo_sapiens 0 1718
ENST00000430217 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000430241 MSH5-052 protein_coding Homo_sapiens 0 267
ENST00000432714 MSH5-012 protein_coding Homo_sapiens 0 213
ENST00000435700 MSH5-004 protein_coding Homo_sapiens 0 2841
ENST00000435942 MSH5-011 protein_coding Homo_sapiens 0 1125
ENST00000436004 MSH5-006 protein_coding Homo_sapiens 0 1718
ENST00000436091 MSH5-002 protein_coding Homo_sapiens 0 918
ENST00000436192 MSH5-004 protein_coding Homo_sapiens 0 2841
ENST00000436559 MSH5-005 protein_coding Homo_sapiens 0 2047
ENST00000437726 MSH5-003 protein_coding Homo_sapiens 0 1712
ENST00000439816 MSH5-006 protein_coding Homo_sapiens 0 1718
ENST00000441395 MSH5-002 protein_coding Homo_sapiens 0 2854
ENST00000441401 MSH5-001 protein_coding Homo_sapiens 0 2854
ENST00000442688 MSH5-004 protein_coding Homo_sapiens 0 1700
ENST00000443040 MSH5-005 protein_coding Homo_sapiens 0 553
ENST00000443665 MSH5-011 protein_coding Homo_sapiens 0 1125
ENST00000443906 MSH5-054 protein_coding Homo_sapiens 0 604
ENST00000444225 MSH5-005 protein_coding Homo_sapiens 0 1437
ENST00000445611 MSH5-008 protein_coding Homo_sapiens 0 604
ENST00000446724 MSH5-051 protein_coding Homo_sapiens 0 361
ENST00000448169 MSH5-001 protein_coding Homo_sapiens 0 1718
ENST00000448617 MSH5-005 protein_coding Homo_sapiens 0 2034
ENST00000450148 MSH5-011 protein_coding Homo_sapiens 0 1125
ENST00000454820 MSH5-002 protein_coding Homo_sapiens 0 1712
ENST00000456436 MSH5-011 protein_coding Homo_sapiens 0 472
ENST00000456839 MSH5-001 protein_coding Homo_sapiens 0 2854
ENST00000457742 MSH5-001 protein_coding Homo_sapiens 0 2854
ENST00000457917 MSH5-005 protein_coding Homo_sapiens 0 1978
ENST00000458058 MSH5-001 protein_coding Homo_sapiens 0 2538
ENST00000458144 MSH5-005 protein_coding Homo_sapiens 0 2047
ENST00000458424 MSH5-005 protein_coding Homo_sapiens 0 1452
ENST00000460275 MSH5-010 processed_transcript Homo_sapiens 0 675
ENST00000461588 MSH5-013 processed_transcript Homo_sapiens 0 383
ENST00000462922 MSH5-014 nonsense_mediated_decay Homo_sapiens 4.00001e-41 171
ENST00000462956 MSH5-012 retained_intron Homo_sapiens 0 300
ENST00000463094 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000463144 MSH5-010 nonsense_mediated_decay Homo_sapiens 0 2012
ENST00000464561 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000465562 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000465615 MSH5-013 processed_transcript Homo_sapiens 0 383
ENST00000466318 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1712
ENST00000467319 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000468136 MSH5-022 retained_intron Homo_sapiens 0 782
ENST00000468394 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000468602 MSH5-013 processed_transcript Homo_sapiens 0 383
ENST00000469011 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000469644 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 2309
ENST00000469909 MSH5-SAPCD1-004 processed_transcript Homo_sapiens 0 466
ENST00000469938 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000470446 MSH5-012 retained_intron Homo_sapiens 0 300
ENST00000471718 MSH5-013 protein_coding Homo_sapiens 0 213
ENST00000471854 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000473342 MSH5-010 processed_transcript Homo_sapiens 0 675
ENST00000475813 MSH5-012 retained_intron Homo_sapiens 0 300
ENST00000476578 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000477402 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000477687 MSH5-010 processed_transcript Homo_sapiens 0 675
ENST00000478326 MSH5-010 processed_transcript Homo_sapiens 0 675
ENST00000478592 MSH5-013 processed_transcript Homo_sapiens 0 383
ENST00000480223 MSH5-SAPCD1-003 processed_transcript Homo_sapiens 0 472
ENST00000480377 MSH5-010 protein_coding Homo_sapiens 0 213
ENST00000480622 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000480850 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 2309
ENST00000480915 MSH5-003 processed_transcript Homo_sapiens 0 553
ENST00000480921 MSH5-015 processed_transcript Homo_sapiens 0 411
ENST00000482009 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000482113 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000482280 MSH5-019 processed_transcript Homo_sapiens 0 725
ENST00000482326 MSH5-010 processed_transcript Homo_sapiens 0 675
ENST00000484258 MSH5-013 processed_transcript Homo_sapiens 4.00001e-41 171
ENST00000484309 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000485553 MSH5-SAPCD1-003 processed_transcript Homo_sapiens 0 466
ENST00000485795 MSH5-013 processed_transcript Homo_sapiens 0 383
ENST00000486024 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000486216 MSH5-015 processed_transcript Homo_sapiens 0 466
ENST00000486924 MSH5-015 processed_transcript Homo_sapiens 0 466
ENST00000487191 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000487295 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000488507 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000489823 MSH5-015 retained_intron Homo_sapiens 0 411
ENST00000490125 MSH5-003 processed_transcript Homo_sapiens 0 1991
ENST00000490771 MSH5-012 retained_intron Homo_sapiens 0 300
ENST00000491552 MSH5-SAPCD1-004 processed_transcript Homo_sapiens 0 466
ENST00000492052 MSH5-006 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000492444 MSH5-009 retained_intron Homo_sapiens 0 399
ENST00000492776 MSH5-SAPCD1-003 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000493662 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 2309
ENST00000494492 MSH5-014 retained_intron Homo_sapiens 0 411
ENST00000494635 MSH5-017 processed_transcript Homo_sapiens 0 267
ENST00000494646 MSH5-023 retained_intron Homo_sapiens 0 320
ENST00000495073 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 1712
ENST00000495525 MSH5-007 processed_transcript Homo_sapiens 0 911
ENST00000497253 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000497269 MSH5-012 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000498391 MSH5-010 processed_transcript Homo_sapiens 0 241
ENST00000498473 MSH5-SAPCD1-003 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000548003 MSH5-SAPCD1-203 protein_coding Homo_sapiens 0 911
ENST00000552302 MSH5-SAPCD1-204 protein_coding Homo_sapiens 0 911
ENST00000583103 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 2309

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