C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 5 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174026 Msh5-003 ENSMUSG00000007035 10090 - 17:35028609-35033291 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000174026
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000174026 0.332±0.09 0.251±0.20 0.669±0.13 0.617±0.07 0.389±0.00 1.125±1.01 0.866±0.12 0.106±0.06 0.465±0.18 0.320±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375703 MSH5-004 protein_coding Homo_sapiens 0 1221
ENST00000375740 MSH5-005 protein_coding Homo_sapiens 0 959
ENST00000375750 MSH5-002 protein_coding Homo_sapiens 0 1234
ENST00000375755 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000395853 MSH5-006 protein_coding Homo_sapiens 0 1234
ENST00000412201 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000412975 MSH5-006 protein_coding Homo_sapiens 0 918
ENST00000414412 MSH5-006 protein_coding Homo_sapiens 0 1234
ENST00000414514 MSH5-004 protein_coding Homo_sapiens 0 1234
ENST00000414810 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000416549 MSH5-002 protein_coding Homo_sapiens 0 1234
ENST00000416819 MSH5-004 protein_coding Homo_sapiens 0 904
ENST00000419269 MSH5-004 protein_coding Homo_sapiens 0 1221
ENST00000422428 MSH5-008 protein_coding Homo_sapiens 0 193
ENST00000423982 MSH5-021 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000425344 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000426512 MSH5-002 protein_coding Homo_sapiens 0 1221
ENST00000427735 MSH5-002 protein_coding Homo_sapiens 0 1234
ENST00000427968 MSH5-002 protein_coding Homo_sapiens 0 918
ENST00000430216 MSH5-006 protein_coding Homo_sapiens 0 1234
ENST00000430241 MSH5-052 protein_coding Homo_sapiens 0 267
ENST00000435700 MSH5-004 protein_coding Homo_sapiens 0 1221
ENST00000435942 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000436004 MSH5-006 protein_coding Homo_sapiens 0 1234
ENST00000436192 MSH5-004 protein_coding Homo_sapiens 0 1221
ENST00000436559 MSH5-005 protein_coding Homo_sapiens 0 974
ENST00000437726 MSH5-003 protein_coding Homo_sapiens 0 1234
ENST00000439816 MSH5-006 protein_coding Homo_sapiens 0 1234
ENST00000441395 MSH5-002 protein_coding Homo_sapiens 0 1234
ENST00000441401 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000442688 MSH5-004 protein_coding Homo_sapiens 0 1221
ENST00000443665 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000444225 MSH5-005 protein_coding Homo_sapiens 0 959
ENST00000446724 MSH5-051 protein_coding Homo_sapiens 0 193
ENST00000448169 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000448617 MSH5-005 protein_coding Homo_sapiens 0 959
ENST00000450148 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000454820 MSH5-002 protein_coding Homo_sapiens 0 1234
ENST00000456436 MSH5-011 protein_coding Homo_sapiens 0 193
ENST00000456839 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000457742 MSH5-001 protein_coding Homo_sapiens 0 1234
ENST00000457917 MSH5-005 protein_coding Homo_sapiens 0 904
ENST00000458058 MSH5-001 protein_coding Homo_sapiens 0 918
ENST00000458144 MSH5-005 protein_coding Homo_sapiens 0 974
ENST00000458424 MSH5-005 protein_coding Homo_sapiens 0 974
ENST00000460275 MSH5-010 processed_transcript Homo_sapiens 0.000000000001 79
ENST00000463144 MSH5-010 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000465562 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000466318 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000467319 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000468136 MSH5-022 retained_intron Homo_sapiens 0 193
ENST00000469011 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000469644 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000469909 MSH5-SAPCD1-004 processed_transcript Homo_sapiens 0 466
ENST00000469938 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000471854 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000473342 MSH5-010 processed_transcript Homo_sapiens 0.000000000001 79
ENST00000476578 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000478326 MSH5-010 processed_transcript Homo_sapiens 0.000000000001 79
ENST00000480223 MSH5-SAPCD1-003 processed_transcript Homo_sapiens 0 472
ENST00000480622 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000480850 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000480921 MSH5-015 processed_transcript Homo_sapiens 0 411
ENST00000482009 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000482326 MSH5-010 processed_transcript Homo_sapiens 0.000000000001 79
ENST00000484309 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000485553 MSH5-SAPCD1-003 processed_transcript Homo_sapiens 0 466
ENST00000486024 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000486216 MSH5-015 processed_transcript Homo_sapiens 0 466
ENST00000486924 MSH5-015 processed_transcript Homo_sapiens 0 466
ENST00000487191 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000487295 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000488507 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000489823 MSH5-015 retained_intron Homo_sapiens 0 193
ENST00000490125 MSH5-003 processed_transcript Homo_sapiens 0 918
ENST00000491552 MSH5-SAPCD1-004 processed_transcript Homo_sapiens 0 466
ENST00000492052 MSH5-006 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000492776 MSH5-SAPCD1-003 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000493662 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000494492 MSH5-014 retained_intron Homo_sapiens 0 193
ENST00000494635 MSH5-017 processed_transcript Homo_sapiens 0 267
ENST00000494646 MSH5-023 retained_intron Homo_sapiens 0 320
ENST00000495073 MSH5-SAPCD1-002 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000495525 MSH5-007 processed_transcript Homo_sapiens 0 885
ENST00000497253 MSH5-017 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000498391 MSH5-010 processed_transcript Homo_sapiens 0.0000000000002 79
ENST00000498473 MSH5-SAPCD1-003 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000548003 MSH5-SAPCD1-203 protein_coding Homo_sapiens 0 885
ENST00000552302 MSH5-SAPCD1-204 protein_coding Homo_sapiens 0 885
ENST00000583103 MSH5-SAPCD1-001 nonsense_mediated_decay Homo_sapiens 0 1234

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