C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aminolevulinate, delta-, synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484952 ALAS1-004 ENSG00000023330 9606 + 3:52198144-52214292 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000484952
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000484952 2.505±0.00 4.247±0.00 2.169±1.29 1.522±0.31 3.900±2.85 4.367±0.00 15.560±13.90 8.040±0.00 3.129±0.00 4.021±0.74 2.343±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003870 IEA 5-aminolevulinate synthase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 TAS:IEA mitochondrial matrix
GO:0006778 TAS:IEA porphyrin-containing compound metabolic process
GO:0006782 IEA protoporphyrinogen IX biosynthetic process
GO:0006783 TAS heme biosynthetic process
GO:0008152 IEA metabolic process
GO:0009058 IEA biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0033014 IEA tetrapyrrole biosynthetic process
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141118 Alas1-001 protein_coding Mus_musculus 0 2298
ENSMUST00000112524 Alas1-003 protein_coding Mus_musculus 0 2298
ENSMUST00000074082 Alas1-002 protein_coding Mus_musculus 0 2285
ENSMUST00000134053 Alas1-004 processed_transcript Mus_musculus 0 2021
ENSMUST00000123601 Alas1-006 retained_intron Mus_musculus 0 682
ENSMUST00000133617 Alas1-005 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000143125 Alas1-007 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000123115 Alas1-008 retained_intron Mus_musculus 0 449

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