C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: queuine tRNA-ribosyltransferase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485050 QTRTD1-002 ENSG00000151576 9606 + 3:114056735-114088349 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000485050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000485050 2.581±0.00 3.412±0.00 1.375±0.00 1.573±0.01 2.570±0.41 2.041±0.49 0.477±0.27 2.320±0.00 1.366±0.13 2.289±0.00 0.284±0.00 2.401±0.88 1.639±0.46 3.808±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0006400 IEA tRNA modification
GO:0008270 IEA zinc ion binding
GO:0008479 ISS:IEA queuine tRNA-ribosyltransferase activity
GO:0008616 ISS:IEA queuosine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146343 Qtrtd1-004 retained_intron Mus_musculus 0 1258
ENSMUST00000156568 Qtrtd1-002 retained_intron Mus_musculus 0 830
ENSMUST00000131360 Qtrtd1-003 retained_intron Mus_musculus 0 782
ENSMUST00000023387 Qtrtd1-001 protein_coding Mus_musculus 0 761
ENSMUST00000151963 Qtrtd1-007 retained_intron Mus_musculus 0 398
ENSMUST00000134792 Qtrtd1-006 nonsense_mediated_decay Mus_musculus 4.99997e-41 174

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