C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP/GTP binding protein-like 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487078 AGBL5-001 ENSG00000084693 9606 + 2:27051646-27070622 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungOvaryTestisENST00000487078
Transcript ID Brain Colon Lung Ovary Testis
ENST00000487078 0.720±0.00 0.942±0.00 0.944±0.00 2.830±1.92 35.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004K CIL_00004K_0001 CGP 2:27032910-27070622
CIL_00004D CIL_00004D_0001 CGP 2:27042364-27071773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004181 ISS:IEA metallocarboxypeptidase activity
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0015631 ISS tubulin binding
GO:0035608 ISS protein deglutamylation
GO:0035611 ISS protein branching point deglutamylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031057 Agbl5-003 protein_coding Mus_musculus 0 3714
ENSMUST00000114700 Agbl5-004 protein_coding Mus_musculus 0 2948
ENSMUST00000114704 Agbl5-001 protein_coding Mus_musculus 0 2911
ENSMUST00000136715 Agbl5-002 nonsense_mediated_decay Mus_musculus 0 2889
ENSMUST00000114696 Agbl5-006 protein_coding Mus_musculus 0 2769
ENSMUST00000046182 Agbl5-010 protein_coding Mus_musculus 0 2706
ENSMUST00000061213 Agbl5-007 protein_coding Mus_musculus 0 2654
ENSMUST00000069705 Agbl5-009 protein_coding Mus_musculus 0 2556
ENSMUST00000134956 Agbl5-005 retained_intron Mus_musculus 0 1578
ENSMUST00000148394 Agbl5-011 retained_intron Mus_musculus 0 1088
ENSMUST00000128744 Agbl5-012 protein_coding Mus_musculus 0 769
ENSMUST00000147149 Agbl5-014 retained_intron Mus_musculus 0 628
ENSMUST00000124908 Agbl5-008 protein_coding Mus_musculus 0 560
ENSMUST00000151117 Agbl5-015 protein_coding Mus_musculus 0 518
ENSMUST00000132253 Ost4-001 protein_coding Mus_musculus 0 505
ENSMUST00000150075 Agbl5-013 processed_transcript Mus_musculus 0 390
ENSDART00000103601 agbl5-001 protein_coding Danio_rerio 0 303
ENSMUST00000132034 Ost4-002 protein_coding Mus_musculus 0 198

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