C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: karyopherin alpha 1 (importin alpha 5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494339 KPNA1-002 ENSG00000114030 9606 - 3:122426985-122514934 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverTestisENST00000494339
Transcript ID Kidney Liver Testis
ENST00000494339 2.648±0.00 2.399±0.00 8.983±0.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006606 IEA protein import into nucleus
GO:0008565 IEA protein transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173696 Kpna1-003 nonsense_mediated_decay Mus_musculus 0 2571
ENSMUST00000172534 Kpna1-004 nonsense_mediated_decay Mus_musculus 0 1943
ENSMUST00000004054 Kpna1-001 protein_coding Mus_musculus 0 1722
ENSMUST00000174500 Kpna1-006 nonsense_mediated_decay Mus_musculus 0 737
ENSMUST00000173641 Kpna1-009 protein_coding Mus_musculus 0 529
ENSMUST00000173555 Kpna1-005 protein_coding Mus_musculus 0 523
ENSMUST00000173715 Kpna1-002 retained_intron Mus_musculus 0 520
ENSMUST00000173469 Kpna1-008 retained_intron Mus_musculus 0 492
ENSMUST00000174737 Kpna1-007 nonsense_mediated_decay Mus_musculus 0 379
ENSMUST00000172991 Kpna1-010 retained_intron Mus_musculus 6e-38 163

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