C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCAAT/enhancer binding protein (C/EBP), alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498907 CEBPA-001 ENSG00000245848 9606 - 19:33299934-33302564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000498907
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000498907 45.017±0.00 3.551±0.00 1.089±0.79 70.393±69.06 3.275±0.02 0.406±0.02 7.109±5.05 15.133±13.68 4.681±1.06 3.162±3.12 3.244±1.55 17.737±6.27 1.712±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UH CIL_0003UH_0002 CGP 19:33299934-33382686

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000050 IEA urea cycle
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001889 IEA liver development
GO:0001892 IEA embryonic placenta development
GO:0003677 TAS DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 NAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005667 IEA transcription factor complex
GO:0006091 TAS generation of precursor metabolites and energy
GO:0006351 IDA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006953 IEA acute-phase response
GO:0007005 IEA mitochondrion organization
GO:0007584 IEA response to nutrient
GO:0008134 IPI transcription factor binding
GO:0008203 IEA cholesterol metabolic process
GO:0008285 IEA negative regulation of cell proliferation
GO:0016032 IEA viral process
GO:0016363 IEA nuclear matrix
GO:0019221 NAS cytokine-mediated signaling pathway
GO:0019904 IEA protein domain specific binding
GO:0030099 NAS myeloid cell differentiation
GO:0030154 IEA cell differentiation
GO:0030225 IEA macrophage differentiation
GO:0030324 IEA lung development
GO:0031100 IEA organ regeneration
GO:0032403 IEA protein complex binding
GO:0033274 IEA response to vitamin B2
GO:0035189 IEA Rb-E2F complex
GO:0042127 IEA regulation of cell proliferation
GO:0042803 IEA protein homodimerization activity
GO:0043234 IEA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045444 IEA fat cell differentiation
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0045945 IDA positive regulation of transcription from RNA polymerase III promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048469 IEA cell maturation
GO:0048839 IEA inner ear development
GO:0050872 IEA white fat cell differentiation
GO:0050873 IEA brown fat cell differentiation
GO:0051384 IEA response to glucocorticoid
GO:0071285 IEA cellular response to lithium ion
GO:0071407 IEA cellular response to organic cyclic compound
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042985 Cebpa-201 protein_coding Mus_musculus 0 1947
ENSMUST00000070642 Cebpb-001 protein_coding Mus_musculus 0 191
ENSMUST00000148262 Tmem189-002 processed_transcript Mus_musculus 1.4013e-45 189
ENSMUST00000096232 Cebpd-201 pseudogene Mus_musculus 3e-27 128

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