C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCAAT/enhancer binding protein (C/EBP), beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070642 Cebpb-001 ENSMUSG00000056501 10090 + 2:167688915-167690418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000070642
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000070642 77.953±12.64 648.892±132.21 57.335±12.43 123.757±39.64 55.476±6.46 30.419±11.30 59.313±0.00 51.287±19.04 158.914±45.32 33.377±7.80 274.296±40.37 142.999±73.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087E CIL_00087E_0002 VISTA 2:167269881-167871243
CIL_0007ZW CIL_0007ZW_0002 VISTA 2:167542374-168145654
CIL_00079R CIL_00079R_0002 CGP 2:167607850-167689822
CIL_0007H0 CIL_0007H0_0002 CGP 2:167642608-167690418
CIL_0007H3 CIL_0007H3_0002 CGP 2:167688915-167979385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000779 IDA condensed chromosome, centromeric region
GO:0000790 IDA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001892 IGI embryonic placenta development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0016363 IDA nuclear matrix
GO:0030182 IDA neuron differentiation
GO:0032496 IMP response to lipopolysaccharide
GO:0033598 IMP mammary gland epithelial cell proliferation
GO:0034976 ISS response to endoplasmic reticulum stress
GO:0035259 IEA glucocorticoid receptor binding
GO:0042803 IDA protein homodimerization activity
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045408 IDA regulation of interleukin-6 biosynthetic process
GO:0045444 IDA fat cell differentiation
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0050873 IMP brown fat cell differentiation
GO:0060644 IMP mammary gland epithelial cell differentiation
GO:0060850 IMP regulation of transcription involved in cell fate commitment
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303004 CEBPB-001 protein_coding Homo_sapiens 0 645
ENST00000498907 CEBPA-001 protein_coding Homo_sapiens 0 191

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