C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521552 RPL7AP33-001 ENSG00000254200 9606 - 5:173225836-173226423 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyMuscleOvaryENST00000521552
Transcript ID Adipose Adrenal Breast Colon Kidney Muscle Ovary
ENST00000521552 0.085±0.00 0.183±0.00 0.159±0.00 0.176±0.00 0.062±0.00 0.079±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023O CIL_00023O_0001 CGP 5:173144442-173235357

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 3e-26 122
ENSMUST00000162331 Gm15812-001 unprocessed_pseudogene Mus_musculus 5e-24 115

Loading