C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524558 SERPINH1-006 ENSG00000149257 9606 + 11:75562370-75572782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverLungENST00000524558
Transcript ID Bladder Brain Colon Liver Lung
ENST00000524558 0.749±0.00 0.096±0.00 1.469±0.00 1.359±0.00 4.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0001 VISTA 11:75253021-75855707
CIL_0001SV CIL_0001SV_0002 CGP 11:75434640-75572783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003433 IEA chondrocyte development involved in endochondral bone morphogenesis
GO:0004867 IBA serine-type endopeptidase inhibitor activity
GO:0005515 IEA protein binding
GO:0005518 NAS collagen binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005783 NAS endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0006986 TAS response to unfolded protein
GO:0010951 IBA negative regulation of endopeptidase activity
GO:0030162 IBA regulation of proteolysis
GO:0030198 TAS extracellular matrix organization
GO:0030199 IEA collagen fibril organization
GO:0032964 IEA collagen biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0051604 IEA protein maturation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094154 Serpinh1-201 protein_coding Mus_musculus 0 1648
ENSMUST00000169437 Serpinh1-202 protein_coding Mus_musculus 0 1624

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