C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528829 ARHGAP20-004 ENSG00000137727 9606 - 11:110577054-110712728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000528829
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000528829 0.047±0.00 0.637±0.00 0.067±0.00 0.263±0.00 0.021±0.00 0.251±0.17 0.190±0.00 1.374±0.00 0.432±0.00 0.713±0.62 0.142±0.05 1.705±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C3 CIL_0002C3_0002 CGP 11:110429883-110713189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065496 Arhgap20-002 protein_coding Mus_musculus 0 2955
ENSMUST00000130405 Arhgap20-001 protein_coding Mus_musculus 0 2955
ENSMUST00000126567 Arhgap20-006 processed_transcript Mus_musculus 0 671
ENSMUST00000146509 Arhgap20-004 retained_intron Mus_musculus 0 475

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