C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pseudouridylate synthase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530811 PUS3-001 ENSG00000110060 9606 - 11:125893485-125896330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000530811
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000530811 1.078±0.00 1.532±0.00 0.429±0.00 2.500±0.00 0.385±0.00 1.009±0.22 2.635±1.75 2.427±0.41 4.018±0.00 1.909±0.83 1.105±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0001 VISTA 11:125757160-126360423

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034615 Pus3-001 protein_coding Mus_musculus 0 1570
ENSMUST00000135768 Pus3-002 retained_intron Mus_musculus 0 1171
ENSMUST00000121246 Pus3-003 protein_coding Mus_musculus 0 1096
ENSMUST00000132547 Hyls1-002 retained_intron Mus_musculus 0 699

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