C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533164 DDX20-003 ENSG00000064703 9606 + 1:111755245-111765830 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 TAS spliceosomal tri-snRNP complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005856 TAS cytoskeleton
GO:0006200 IEA ATP catabolic process
GO:0006396 TAS RNA processing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0043065 ISS positive regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090680 Ddx20-001 protein_coding Mus_musculus 0 1079
ENSMUST00000132008 Ddx20-002 retained_intron Mus_musculus 0 483

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