C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090680 Ddx20-001 ENSMUSG00000027905 10090 - 3:105678270-105687574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090680
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090680 2.935±1.72 3.133±0.20 4.679±1.67 2.372±0.59 2.088±0.47 1.740±0.14 2.651±0.21 4.513±2.58 2.983±0.63 2.974±0.55 3.333±0.76 8.702±3.96 58.457±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Y CIL_00075Y_0002 CGP 3:105452330-105687574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IEA membrane
GO:0017053 IDA transcriptional repressor complex
GO:0019904 IEA protein domain specific binding
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex
GO:0043065 IMP positive regulation of apoptotic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048477 IMP oogenesis
GO:0050810 IMP regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369702 DDX20-001 protein_coding Homo_sapiens 0 2575
ENST00000475700 DDX20-002 protein_coding Homo_sapiens 0 1081
ENST00000524894 DDX20-004 retained_intron Homo_sapiens 0 267
ENST00000533164 DDX20-003 nonsense_mediated_decay Homo_sapiens 0 1079

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