C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD50 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533482 RAD50-002 ENSG00000113522 9606 + 5:132556938-132642476 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000533482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000533482 2.283±0.00 1.922±0.00 0.973±0.00 2.071±0.23 2.420±0.04 2.833±1.15 1.859±1.01 2.806±1.30 1.785±0.85 1.578±0.44 2.536±0.00 7.167±6.67 7.467±9.67 18.091±10.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006281 IEA DNA repair
GO:0030870 IEA Mre11 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020649 Rad50-001 protein_coding Mus_musculus 0 4157
ENSMUST00000128483 Rad50-002 nonsense_mediated_decay Mus_musculus 0 1430
ENSMUST00000124352 Rad50-005 protein_coding Mus_musculus 0 1166
ENSMUST00000152598 Rad50-003 processed_transcript Mus_musculus 0 407
ENSMUST00000126121 Rad50-004 processed_transcript Mus_musculus 0 272

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