C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536820 PSMC1P8-001 ENSG00000256896 9606 - 12:17383352-17384647 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleTestisENST00000536820
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Testis
ENST00000536820 0.027±0.00 0.019±0.00 0.009±0.00 0.018±0.00 0.178±0.00 0.025±0.00 0.065±0.04 0.032±0.00 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_000901 CIL_000901_0001 VISTA 12:16858850-17460825
CIL_00098Q CIL_00098Q_0001 VISTA 12:17204798-17806074
CIL_000883 CIL_000883_0001 VISTA 12:17257350-17858280
CIL_0008SJ CIL_0008SJ_0001 VISTA 12:17371921-17973401

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021595 Psmc1-201 protein_coding Mus_musculus 0 1297
ENSMUST00000122140 Gm9575-001 processed_pseudogene Mus_musculus 0 662

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