C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protease (prosome, macropain) 26S subunit, ATPase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021595 Psmc1-201 ENSMUSG00000021178 10090 + 12:100110186-100123364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021595 25.383±2.19 24.035±2.85 25.629±2.63 54.912±35.08 20.604±6.81 18.707±2.31 25.045±1.54 31.042±1.43 41.146±11.76 21.243±1.40 57.819±2.62 38.323±29.70 82.516±50.79 28.748±13.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L5 CIL_0002L5_0003 CGP 12:99964499-100123364
CIL_0001JW CIL_0001JW_0002 CGP 12:100110186-100159653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005838 IDA proteasome regulatory particle
GO:0016020 IEA membrane
GO:0016787 IEA hydrolase activity
GO:0017025 IEA TBP-class protein binding
GO:0022624 IDA proteasome accessory complex
GO:0030163 IEA protein catabolic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261303 PSMC1-001 protein_coding Homo_sapiens 0 1851
ENST00000354366 NRDE2-001 protein_coding Homo_sapiens 0 252
ENST00000396338 PSMC1P9-001 processed_pseudogene Homo_sapiens 0 1600
ENST00000405257 PSMC1P11-001 processed_pseudogene Homo_sapiens 0 1493
ENST00000423961 PSMC1P2-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000434820 PSMC1P10-001 processed_pseudogene Homo_sapiens 0 1539
ENST00000436509 PSMC1P12-001 processed_pseudogene Homo_sapiens 0 1349
ENST00000453822 PSMC1P3-001 processed_pseudogene Homo_sapiens 0 1528
ENST00000458195 PSMC1P13-001 processed_pseudogene Homo_sapiens 0 573
ENST00000477233 PSMC1P6-001 processed_pseudogene Homo_sapiens 0 1105
ENST00000478110 PSMC1P1-001 processed_pseudogene Homo_sapiens 0 1834
ENST00000495689 PSMC1P7-001 processed_pseudogene Homo_sapiens 0 1245
ENST00000512850 PSMC1P5-001 processed_pseudogene Homo_sapiens 0 230
ENST00000515236 PSMC1P4-001 processed_pseudogene Homo_sapiens 0 1452
ENST00000536820 PSMC1P8-001 processed_pseudogene Homo_sapiens 0 1297
ENST00000543772 PSMC1-002 protein_coding Homo_sapiens 0 1589
ENST00000553835 PSMC1-004 protein_coding Homo_sapiens 0 431
ENST00000554624 PSMC1-005 retained_intron Homo_sapiens 0 442
ENST00000555679 PSMC1-006 retained_intron Homo_sapiens 0 723
ENST00000555787 PSMC1-003 retained_intron Homo_sapiens 0 455
ENST00000557357 PSMC1-007 retained_intron Homo_sapiens 0 671

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