C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceroid-lipofuscinosis, neuronal 6, late infantile, variant
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538696 CLN6-004 ENSG00000128973 9606 - 15:68208067-68257106 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001573 IMP ganglioside metabolic process
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0007042 IMP lysosomal lumen acidification
GO:0008203 IMP cholesterol metabolic process
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0016021 NAS integral component of membrane
GO:0030163 NAS protein catabolic process
GO:0030203 IMP glycosaminoglycan metabolic process
GO:0042803 IDA protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045862 IMP positive regulation of proteolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034776 Cln6-001 protein_coding Mus_musculus 0 1013
ENSMUST00000138276 Cln6-003 nonsense_mediated_decay Mus_musculus 0 582
ENSMUST00000124984 Cln6-004 protein_coding Mus_musculus 0 355
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 254
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 254
ENSMUST00000141821 Cln6-002 nonsense_mediated_decay Mus_musculus 0 207

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