C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | ceroid-lipofuscinosis, neuronal 6 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000141821  |
Cln6-002 |
ENSMUSG00000032245 |
10090 | + |
9:62838792-62846018  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0003W4 | CIL_0003W4_0002 | CGP | 9:62791832-62852006 |
| CIL_0008FO | CIL_0008FO_0002 | VISTA | 9:62808235-63410238 |
| CIL_00098T | CIL_00098T_0002 | VISTA | 9:62831587-63433435 |
| CIL_0004FC | CIL_0004FC_0003 | CGP | 9:62838785-62875918 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0007040 | IMP | lysosome organization |
| GO:0007601 | IMP | visual perception |
| GO:0031987 | IMP | locomotion involved in locomotory behavior |
| GO:0044265 | IMP | cellular macromolecule catabolic process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000249806
|
CLN6-001 | protein_coding | Homo_sapiens | 0 | 211 |
|
ENST00000538696
|
CLN6-004 | protein_coding | Homo_sapiens | 0 | 207 |
|
ENST00000564752
|
CLN6-006 | protein_coding | Homo_sapiens | 0 | 211 |
|
ENST00000564846
|
CLN6-002 | retained_intron | Homo_sapiens | 0 | 213 |
|
ENST00000566347
|
CLN6-005 | protein_coding | Homo_sapiens | 0 | 211 |
|
ENST00000567060
|
CLN6-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 211 |
|
ENST00000569336
|
CLN6-009 | processed_transcript | Homo_sapiens | 1e-29 | 134 |
