C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538999 MAFF-203 ENSG00000185022 9606 + 22:38201932-38216503 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000538999
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000538999 13.389±0.00 4.532±0.00 7.316±0.00 13.217±0.00 1.793±0.00 2.169±0.00 1.550±0.00 29.892±0.00 8.931±6.06 2.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0007CL CIL_0007CL_0001 CGP 22:38084889-38205690
CIL_0003QB CIL_0003QB_0001 CGP 22:38111495-38216511
CIL_0007CG CIL_0007CG_0001 CGP 22:38200767-38273034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007567 TAS parturition
GO:0007596 TAS blood coagulation
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163691 Maff-202 protein_coding Mus_musculus 0 597
ENSMUST00000096350 Maff-201 protein_coding Mus_musculus 0 597
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0.000000000009 77
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.000000005 68
ENSMUST00000188583 Ccdc115-002 retained_intron Mus_musculus 0.00000002 66
ENSMUST00000042493 Ccdc115-001 protein_coding Mus_musculus 0.00000002 66

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