C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037912 Ssh2-001 ENSMUSG00000037926 10090 + 11:77216287-77460220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037912 2.324±0.87 2.078±0.00 5.215±0.23 7.642±3.03 3.249±1.50 2.999±0.84 3.465±0.95 1.270±0.48 1.688±0.64 2.639±0.62 5.710±1.58 2.058±0.93 1.599±0.48 22.236±1.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000873 CIL_000873_0002 VISTA 11:77122469-77724441
CIL_0009BZ CIL_0009BZ_0002 VISTA 11:77122483-77724456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003779 IBA actin binding
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 IBA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0030054 IEA cell junction
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000064724 CLDN11-001 protein_coding Homo_sapiens 0.00000000000001 86
ENST00000263275 OPA3-002 protein_coding Homo_sapiens 0.0000000004 73
ENST00000269033 SSH2-001 protein_coding Homo_sapiens 0 4937
ENST00000317775 NOS1-001 protein_coding Homo_sapiens 0.00000003 68
ENST00000324677 SSH2-005 processed_transcript Homo_sapiens 0 640
ENST00000337002 SEC62-001 protein_coding Homo_sapiens 0.000000001 71
ENST00000338483 MAFF-001 protein_coding Homo_sapiens 0.00000000001 77
ENST00000369301 NHLRC2-001 protein_coding Homo_sapiens 0.000004 60
ENST00000371608 BCAS4-002 protein_coding Homo_sapiens 0.00000000003 77
ENST00000371754 ZNFX1-004 protein_coding Homo_sapiens 0.000000000000009 88
ENST00000381165 MIS12-001 protein_coding Homo_sapiens 0.000000006 68
ENST00000393939 HAP1-007 protein_coding Homo_sapiens 0.000000004 69
ENST00000394848 SSH2-002 retained_intron Homo_sapiens 0 1960
ENST00000407965 MAFF-002 protein_coding Homo_sapiens 0.000000000009 77
ENST00000426621 MAFF-201 protein_coding Homo_sapiens 0.000000000009 77
ENST00000467136 TAB3-002 nonsense_mediated_decay Homo_sapiens 0.000003 60
ENST00000468358 CLDN11-006 processed_transcript Homo_sapiens 0.000000000000004 86
ENST00000488490 PPIP5K1-014 processed_transcript Homo_sapiens 0.00001 55
ENST00000489485 CLDN11-004 processed_transcript Homo_sapiens 0.00000000000001 86
ENST00000490103 THOC5-001 protein_coding Homo_sapiens 0.000000000005 79
ENST00000508961 ARHGEF38-007 processed_transcript Homo_sapiens 0.000000001 68
ENST00000510406 ARHGEF38-006 processed_transcript Homo_sapiens 0.000000002 68
ENST00000513494 ART3-003 processed_transcript Homo_sapiens 0.000000000002 79
ENST00000529405 C11orf73-008 retained_intron Homo_sapiens 0.0000002 62
ENST00000530958 ATM-002 protein_coding Homo_sapiens 0.00000005 66
ENST00000538320 MAFF-202 protein_coding Homo_sapiens 0.00000000001 77
ENST00000538999 MAFF-203 protein_coding Homo_sapiens 0.000000000009 77
ENST00000540801 SSH2-003 protein_coding Homo_sapiens 0 4590
ENST00000545511 AACS-005 retained_intron Homo_sapiens 0.000000004 69
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 0.00000002 64
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0.00000002 64
ENST00000554481 UNC45A-020 retained_intron Homo_sapiens 0.000000004 66
ENST00000556486 SCFD1-012 retained_intron Homo_sapiens 0.0000000002 71
ENST00000561936 MBTPS1-017 retained_intron Homo_sapiens 0.000000006 66
ENST00000562886 MBTPS1-006 retained_intron Homo_sapiens 0.00000003 66
ENST00000564049 MBTPS1-018 retained_intron Homo_sapiens 0.000000005 66
ENST00000573759 MIS12-002 protein_coding Homo_sapiens 0.000000005 68
ENST00000577483 SSH2-006 retained_intron Homo_sapiens 0 944
ENST00000577991 SSH2-007 protein_coding Homo_sapiens 6e-37 158
ENST00000578411 SSH2-010 retained_intron Homo_sapiens 0 285
ENST00000579040 SSH2-004 nonsense_mediated_decay Homo_sapiens 0 989
ENST00000579954 SSH2-009 protein_coding Homo_sapiens 0 204
ENST00000582084 SSH2-008 protein_coding Homo_sapiens 8.99998e-41 171
ENST00000583482 SPECC1-025 protein_coding Homo_sapiens 0.000000000002 77
ENST00000590153 SSH2-011 protein_coding Homo_sapiens 0 285
ENST00000592397 SSH2-012 protein_coding Homo_sapiens 0 538
ENST00000595509 SEPW1-010 processed_transcript Homo_sapiens 0.000000005 66
ENST00000598273 SEPW1-002 retained_intron Homo_sapiens 0.00000002 66
ENST00000599302 SEPW1-008 processed_transcript Homo_sapiens 0.000000005 66
ENST00000599590 SEPW1-009 processed_transcript Homo_sapiens 0.000000005 66
ENST00000611091 MIS12-201 protein_coding Homo_sapiens 0.000000006 68
ENST00000618760 NOS1-202 protein_coding Homo_sapiens 0.00000003 68

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