C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000477227}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548184 RP11-123K3.4-001 ENSG00000258830 9606 - 12:57249609-57296484 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KP CIL_0002KP_0002 CGP 12:57234903-57251193

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164161 R3hdm2-008 nonsense_mediated_decay Mus_musculus 0 2455
ENSMUST00000169888 R3hdm2-004 protein_coding Mus_musculus 0 2337
ENSMUST00000105249 R3hdm2-006 protein_coding Mus_musculus 0 2337
ENSMUST00000164831 R3hdm2-002 protein_coding Mus_musculus 0 2335
ENSMUST00000064793 R3hdm2-003 protein_coding Mus_musculus 0 1792
ENSMUST00000105250 R3hdm2-202 protein_coding Mus_musculus 0 1788
ENSMUST00000077046 R3hdm2-201 protein_coding Mus_musculus 0 1788
ENSMUST00000105251 R3hdm2-005 protein_coding Mus_musculus 0 1788
ENSMUST00000170336 R3hdm2-007 protein_coding Mus_musculus 0 1788
ENSMUST00000166820 R3hdm2-001 protein_coding Mus_musculus 0 1788
ENSMUST00000191337 RP23-424A2.2-001 processed_pseudogene Mus_musculus 0 1157
ENSMUST00000171823 R3hdm2-018 processed_transcript Mus_musculus 0 553
ENSMUST00000168268 R3hdm2-015 retained_intron Mus_musculus 0 538
ENSMUST00000168079 R3hdm2-017 protein_coding Mus_musculus 0 525
ENSMUST00000171426 R3hdm2-016 protein_coding Mus_musculus 0 466
ENSMUST00000164469 R3hdm2-014 retained_intron Mus_musculus 0 366
ENSMUST00000165440 R3hdm2-019 protein_coding Mus_musculus 2.00386e-43 182
ENSMUST00000163794 R3hdm2-013 retained_intron Mus_musculus 1e-29 135

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