C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Rac GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551260 RACGAP1-029 ENSG00000161800 9606 - 12:50004234-50025435 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_000720 CIL_000720_0001 CGP 12:49961870-49977139
CIL_00071X CIL_00071X_0001 CGP 12:49967194-50033136
CIL_00071Y CIL_00071Y_0001 CGP 12:49976923-50083611

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023756 Racgap1-002 protein_coding Mus_musculus 0 508
ENSMUST00000171702 Racgap1-001 protein_coding Mus_musculus 0 508
ENSMUST00000169810 Racgap1-011 protein_coding Mus_musculus 0 507
ENSMUST00000165730 Racgap1-010 nonsense_mediated_decay Mus_musculus 0 499
ENSMUST00000164983 Racgap1-009 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000168065 Racgap1-004 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000171017 Racgap1-007 retained_intron Mus_musculus 0 276
ENSMUST00000170369 Racgap1-003 retained_intron Mus_musculus 7e-27 124

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