C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rac GTPase-activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171702 Racgap1-001 ENSMUSG00000023015 10090 - 15:99620496-99651643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171702 1.563±0.93 1.944±0.11 0.356±0.00 5.467±0.00 1.115±0.63 4.444±1.02 0.375±0.11 0.703±0.35 0.149±0.00 1.184±0.29 0.210±0.00 5.743±2.33 4.117±0.25 7.409±1.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_00071X CIL_00071X_0002 CGP 15:99601400-99651656
CIL_00071Y CIL_00071Y_0002 CGP 15:99620496-99701127

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 ISS mitotic cytokinesis
GO:0000915 ISS actomyosin contractile ring assembly
GO:0005096 ISS GTPase activator activity
GO:0005515 IEA protein binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005634 ISS nucleus
GO:0007108 ISS cytokinesis, initiation of separation
GO:0007283 ISS spermatogenesis
GO:0007405 IEP neuroblast proliferation
GO:0008017 ISS microtubule binding
GO:0008272 IEA sulfate transport
GO:0009790 IMP embryo development
GO:0019901 IEA protein kinase binding
GO:0030496 ISS midbody
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0032154 ISS cleavage furrow
GO:0032467 ISS positive regulation of cytokinesis
GO:0035556 IEA intracellular signal transduction
GO:0043014 ISS alpha-tubulin binding
GO:0043015 ISS gamma-tubulin binding
GO:0043547 ISS positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0048487 ISS beta-tubulin binding
GO:0051233 ISS spindle midzone
GO:0051256 ISS spindle midzone assembly involved in mitosis
GO:0051988 ISS regulation of attachment of spindle microtubules to kinetochore
GO:0070062 IEA extracellular vesicular exosome
GO:0072686 ISS mitotic spindle
GO:0097149 ISS centralspindlin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312377 RACGAP1-001 protein_coding Homo_sapiens 0 1844
ENST00000427314 RACGAP1-004 protein_coding Homo_sapiens 0 1840
ENST00000454520 RACGAP1-005 protein_coding Homo_sapiens 0 1840
ENST00000546595 RACGAP1-011 protein_coding Homo_sapiens 0 562
ENST00000546723 RACGAP1-030 protein_coding Homo_sapiens 0 459
ENST00000546786 RACGAP1-019 protein_coding Homo_sapiens 0 401
ENST00000547061 RACGAP1-015 processed_transcript Homo_sapiens 0 547
ENST00000547905 RACGAP1-003 protein_coding Homo_sapiens 0 1840
ENST00000548158 RACGAP1-016 retained_intron Homo_sapiens 0 316
ENST00000548320 RACGAP1-013 protein_coding Homo_sapiens 0 464
ENST00000548598 RACGAP1-031 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000548644 RACGAP1-009 protein_coding Homo_sapiens 0 516
ENST00000548824 RACGAP1-026 protein_coding Homo_sapiens 0 553
ENST00000549342 RACGAP1-018 protein_coding Homo_sapiens 0 252
ENST00000550149 RACGAP1-021 protein_coding Homo_sapiens 0 475
ENST00000550663 RACGAP1P-001 processed_pseudogene Homo_sapiens 0 1443
ENST00000551016 RACGAP1-002 protein_coding Homo_sapiens 0 1840
ENST00000551145 RACGAP1-012 protein_coding Homo_sapiens 0 490
ENST00000551260 RACGAP1-029 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000552310 RACGAP1-024 protein_coding Homo_sapiens 0 887

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