C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic homolog 1 (Drosophila) pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554937 PHC1P1-001 ENSG00000179899 9606 - 12:55411727-55414787 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000554937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000554937 0.123±0.00 0.119±0.00 0.145±0.00 0.277±0.15 0.155±0.12 0.109±0.10 0.113±0.00 0.044±0.03 0.319±0.00 0.197±0.13 0.028±0.00 0.365±0.25 0.159±0.04 0.581±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SF CIL_0002SF_0001 CGP 12:55400430-55427192

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079560 Phc1-201 protein_coding Mus_musculus 0 3360
ENSMUST00000160696 Phc1-005 protein_coding Mus_musculus 0 3360
ENSMUST00000161739 Phc1-004 protein_coding Mus_musculus 0 3360
ENSMUST00000160163 Phc1-002 nonsense_mediated_decay Mus_musculus 0 3358
ENSMUST00000159252 Phc1-006 protein_coding Mus_musculus 0 3232
ENSMUST00000112600 Phc1-203 protein_coding Mus_musculus 0 2835
ENSMUST00000081849 Phc1-202 protein_coding Mus_musculus 0 2835
ENSMUST00000161054 Phc1-001 protein_coding Mus_musculus 0 2835
ENSMUST00000161877 Phc1-003 nonsense_mediated_decay Mus_musculus 0 2217
ENSMUST00000160843 Phc1-007 protein_coding Mus_musculus 0 531
ENSMUST00000161210 Phc1-008 protein_coding Mus_musculus 0 274
ENSMUST00000159657 Phc1-012 protein_coding Mus_musculus 0 274
ENSMUST00000161149 Phc1-011 protein_coding Mus_musculus 0 274
ENSMUST00000159384 Phc1-010 protein_coding Mus_musculus 0 274
ENSMUST00000161290 Phc1-009 nonsense_mediated_decay Mus_musculus 0 241
ENSDART00000128810 phc1-201 protein_coding Danio_rerio 5e-25 121
ENSDART00000129536 phc1-202 protein_coding Danio_rerio 5e-25 121
ENSDART00000058496 phc1-001 protein_coding Danio_rerio 5e-25 121

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