C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 15B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563281 RBM15B-001 ENSG00000259956 9606 + 3:51391268-51397908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000563281
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000563281 10.747±0.00 1.273±0.00 5.473±0.00 6.128±3.68 2.602±0.00 2.183±1.65 2.129±0.00 2.573±0.00 0.580±0.00 7.171±0.00 9.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MV CIL_0005MV_0002 CGP 3:51385047-51397908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016032 IEA viral process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055843 Rbm15b-001 protein_coding Mus_musculus 0 3480
ENSMUST00000185707 Rbm15b-002 protein_coding Mus_musculus 0 375
ENSMUST00000161758 Vprbp-002 protein_coding Mus_musculus 5e-28 132

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