C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005MV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063177-ENSDARG00000078966 CGP 7955 22:35034561-35046803
GeneTranscriptPositionBiotype
ENSDARG00000063177 (manf)
mesencephalic astrocyte-derived neurotrophic factor 		ENSDART00000092082 (manf-001) 35034561-35041230 protein_coding
ENSDARG00000078966 (rbm15b)
RNA binding motif protein 15B 		ENSDART00000114531 (rbm15b-201) 35041601-35046800 protein_coding
ENSDART00000136125 (rbm15b-001) 35041601-35046803 protein_coding
CIL_0005MV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145050-ENSG00000259956 CGP 9606 3:51385047-51397908
GeneTranscriptPositionBiotype
ENSG00000145041 (VPRBP)
Vpr (HIV-1) binding protein 		ENST00000335891 (VPRBP-201) 51397842-51483838 protein_coding
ENST00000423656 (VPRBP-001) 51395867-51499994 protein_coding
ENST00000504652 (VPRBP-202) 51395867-51500002 protein_coding
ENSG00000145050 (MANF)
mesencephalic astrocyte-derived neurotrophic factor 		ENST00000446668 (MANF-003) 51385357-51389262 nonsense_mediated_decay
ENST00000470900 (MANF-002) 51385409-51389344 processed_transcript
ENST00000482262 (MANF-004) 51387688-51389149 retained_intron
ENST00000528157 (MANF-001) 51385047-51389397 protein_coding
ENSG00000259956 (RBM15B)
RNA binding motif protein 15B 		ENST00000563281 (RBM15B-001) 51391268-51397908 protein_coding
CIL_0005MV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032575-ENSMUSG00000032575 CGP 10090 9:106838312-106891979
GeneTranscriptPositionBiotype
ENSMUSG00000032575 (Manf)
mesencephalic astrocyte-derived neurotrophic factor 		ENSMUST00000069036 (Manf-002) 106888762-106891415 protein_coding
ENSMUST00000159283 (Manf-001) 106887415-106891979 protein_coding
ENSMUST00000159620 (Manf-007) 106838312-106891872 protein_coding
ENSMUST00000160503 (Manf-005) 106889084-106891870 protein_coding
ENSMUST00000160978 (Manf-004) 106890031-106891915 protein_coding
ENSMUST00000161272 (Manf-006) 106869198-106890283 protein_coding
ENSMUST00000162801 (Manf-003) 106890562-106891917 retained_intron
ENSMUSG00000040325 (Vprbp)
Vpr (HIV-1) binding protein 		ENSMUST00000055009 (Vprbp-003) 106829069-106880438 protein_coding
ENSMUST00000159645 (Vprbp-001) 106821874-106880443 protein_coding
ENSMUST00000161758 (Vprbp-002) 106829069-106880992 protein_coding
ENSMUST00000163657 (Vprbp-004) 106874256-106880158 protein_coding
ENSMUST00000188343 (Vprbp-007) 106850886-106853625 retained_intron
ENSMUSG00000074102 (Rbm15b)
RNA binding motif protein 15B 		ENSMUST00000055843 (Rbm15b-001) 106880918-106887428 protein_coding
ENSMUST00000098424 (Rbm15b-201) 106880929-106882289 protein_coding
ENSMUST00000185707 (Rbm15b-002) 106884751-106885619 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MV_0001ENSDARG00000063177ENSDART00000092082ENSDARG00000078966ENSDART00000114531ENSDART00000136125CIL_0005MV_0002ENSG00000145041ENST00000335891ENST00000423656ENST00000504652ENSG00000145050ENST00000446668ENST00000470900ENST00000482262ENST00000528157ENSG00000259956ENST00000563281CIL_0005MV_0003ENSMUSG00000032575ENSMUST00000069036ENSMUST00000159283ENSMUST00000159620ENSMUST00000160503ENSMUST00000160978ENSMUST00000161272ENSMUST00000162801ENSMUSG00000040325ENSMUST00000055009ENSMUST00000159645ENSMUST00000161758ENSMUST00000163657ENSMUST00000188343ENSMUSG00000074102ENSMUST00000055843ENSMUST00000098424ENSMUST00000185707
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MV_0001ENSDARG00000063177ENSDART00000092082ENSDARG00000078966ENSDART00000114531ENSDART00000136125CIL_0005MV_0002ENSG00000145041ENST00000335891ENST00000423656ENST00000504652ENSG00000145050ENST00000446668ENST00000470900ENST00000482262ENST00000528157ENSG00000259956ENST00000563281CIL_0005MV_0003ENSMUSG00000032575ENSMUST00000069036ENSMUST00000159283ENSMUST00000160978ENSMUST00000162801ENSMUSG00000040325ENSMUST00000055009ENSMUST00000159645ENSMUST00000161758ENSMUSG00000074102ENSMUST00000055843ENSMUST00000185707
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000063177 ENSDART00000092082 N/A N/A N/A 6.023±1.73 N/A N/A 12.463±1.74 14.987±2.67 3.850±0.00 N/A 4.766±0.00 N/A N/A N/A
ENSDARG00000078966 ENSDART00000114531 N/A N/A N/A 4.142±0.13 N/A N/A 0.296±0.00 1.161±0.26 N/A N/A N/A N/A N/A N/A
ENSDART00000136125 N/A N/A N/A 4.615±2.65 N/A N/A 0.854±1.03 0.478±0.33 0.178±0.00 N/A 0.890±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000145041 ENST00000335891 2.413±0.00 2.875±0.00 N/A N/A 3.127±0.00 3.859±0.00 0.993±0.00 N/A 2.054±0.00 3.053±0.00 3.691±0.00 3.303±0.93 2.437±1.21 18.998±7.53
ENST00000423656 3.487±0.00 3.286±0.00 N/A N/A 2.726±1.00 2.323±1.13 1.931±0.00 4.446±0.00 1.388±0.04 1.862±0.95 2.607±0.00 3.049±1.69 1.725±0.02 16.486±0.00
ENST00000504652 N/A N/A 1.026±0.00 N/A N/A N/A 0.207±0.00 0.614±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000145050 ENST00000446668 N/A N/A N/A N/A N/A N/A N/A 1.370±0.00 N/A 9.440±0.00 N/A N/A N/A N/A
ENST00000470900 N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A 0.903±0.00 N/A N/A N/A N/A
ENST00000482262 12.200±0.00 18.212±0.00 N/A 5.966±0.00 11.990±0.00 19.344±14.63 10.553±0.00 46.478±41.78 68.483±0.00 24.429±21.93 3.476±3.20 24.266±2.27 32.254±7.51 28.906±0.02
ENST00000528157 20.560±0.00 22.691±0.00 1.630±0.00 6.078±2.65 13.306±1.78 28.348±22.91 6.204±3.86 38.362±33.57 25.610±21.68 20.933±18.16 2.475±2.12 24.620±17.10 35.926±7.12 34.612±14.96
ENSG00000259956 ENST00000563281 N/A 10.747±0.00 1.273±0.00 5.473±0.00 6.128±3.68 2.602±0.00 2.183±1.65 N/A 2.129±0.00 2.573±0.00 0.580±0.00 7.171±0.00 9.082±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032575 ENSMUST00000069036 N/A N/A 28.109±4.38 41.110±0.00 N/A N/A N/A N/A 36.453±6.71 N/A 5.651±0.89 111.950±69.24 215.813±170.44 96.397±0.00
ENSMUST00000159283 N/A N/A N/A N/A N/A 9.367±0.00 N/A 6.490±0.00 7.795±2.61 10.055±2.66 N/A 21.912±0.00 25.723±1.40 35.516±8.50
ENSMUST00000159620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160978 N/A 172.090±18.55 N/A N/A N/A N/A N/A 47.402±0.00 64.500±20.96 N/A N/A N/A 121.128±16.47 N/A
ENSMUST00000161272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162801 N/A 135.029±32.82 N/A N/A N/A 60.118±0.00 N/A N/A 53.860±8.79 N/A N/A N/A N/A N/A
ENSMUSG00000040325 ENSMUST00000055009 2.633±0.10 8.951±0.61 3.741±0.44 7.206±1.62 6.944±2.85 N/A 1.864±0.19 2.739±0.37 5.080±2.08 N/A 1.053±0.16 10.236±7.24 22.260±0.00 41.415±14.89
ENSMUST00000159645 6.132±2.95 6.437±0.00 N/A 4.703±0.00 3.853±0.17 9.099±0.86 3.132±0.30 3.634±0.38 4.040±0.77 5.823±0.80 N/A 12.871±2.02 N/A 12.333±0.00
ENSMUST00000161758 N/A N/A 3.550±0.10 3.705±1.12 N/A N/A 1.733±0.24 3.681±1.03 3.439±0.93 3.969±0.46 N/A 5.145±0.00 N/A N/A
ENSMUST00000163657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074102 ENSMUST00000055843 7.488±3.87 6.676±0.71 6.061±0.19 13.740±5.73 6.277±1.49 9.694±2.13 2.417±0.10 4.001±0.40 4.060±2.00 7.821±0.28 1.245±0.11 16.920±3.48 5.451±0.54 N/A
ENSMUST00000098424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185707 N/A N/A N/A 65.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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