C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 7 (pure and complicated autosomal recessive)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565891 SPG7-021 ENSG00000197912 9606 + 16:89555864-89557542 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungENST00000565891
Transcript ID Adipose Breast Colon Kidney Lung
ENST00000565891 17.858±0.00 13.087±0.00 12.175±0.00 20.750±0.00 5.962±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000332 CIL_000332_0001 CGP 16:89267627-89557768
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108868 Spg7-201 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000128234 Spg7-005 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000128803 Spg7-002 retained_intron Mus_musculus 9.99967e-42 174
ENSMUST00000153285 Spg7-011 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000149248 Spg7-001 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000125975 Spg7-003 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000135991 Spg7-006 protein_coding Mus_musculus 9.99995e-41 171

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