C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 7 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108868 Spg7-201 ENSMUSG00000000738 10090 + 8:123065281-123097649 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0002 VISTA 8:122617544-123223043
CIL_000332 CIL_000332_0002 CGP 8:122883337-123097760
CIL_000331 CIL_000331_0002 CGP 8:123062942-123105244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006508 IEA proteolysis
GO:0007005 IMP mitochondrion organization
GO:0007155 TAS cell adhesion
GO:0008089 IMP anterograde axon cargo transport
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0030155 TAS regulation of cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268704 SPG7-001 protein_coding Homo_sapiens 0 2314
ENST00000561702 SPG7-006 retained_intron Homo_sapiens 0 704
ENST00000561911 SPG7-018 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000565370 SPG7-014 retained_intron Homo_sapiens 0 254
ENST00000565891 SPG7-021 processed_transcript Homo_sapiens 9.99967e-42 174
ENST00000566221 SPG7-013 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000566682 SPG7-019 protein_coding Homo_sapiens 0 326
ENST00000568205 SPG7-017 retained_intron Homo_sapiens 0 217
ENST00000569720 SPG7-020 retained_intron Homo_sapiens 0 449
ENST00000569820 SPG7-005 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000620811 SPG7-201 protein_coding Homo_sapiens 0 627

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