C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol binding protein 3, interstitial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584701 RBP3-001 ENSG00000265203 9606 + 10:47348371-47357875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyOvaryPlacentaTestisENST00000584701
Transcript ID Adrenal Brain Breast Heart Kidney Ovary Placenta Testis
ENST00000584701 0.006±0.00 0.067±0.00 0.006±0.00 0.006±0.00 0.018±0.00 0.022±0.01 0.027±0.01 0.070±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P7 CIL_0006P7_0002 CGP 10:47322490-47357875
CIL_0000IF CIL_0000IF_0001 CGP 10:47348371-47384273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005501 TAS retinoid binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0006508 IEA proteolysis
GO:0006629 TAS lipid metabolic process
GO:0006810 IEA transport
GO:0007601 TAS visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008236 IEA serine-type peptidase activity
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding
GO:0031982 IDA vesicle
GO:0033165 IEA interphotoreceptor matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035695 Rbp3-201 protein_coding Mus_musculus 0 3243

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